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1

The landscape of long noncoding RNAs in the human transcriptome

Iyer, Matthew K, Niknafs, Yashar S, Malik, Rohit, Singhal, Udit, Sahu, Anirban, Hosono, Yasuyuki, Barrette, Terrence R, Prensner, John R, Evans, Joseph R, Zhao, Shuang, Poliakov, Anton, Cao, Xuhong, D

Journal:

Nature Genetics

Year:

2015

Language:

english

File:

PDF, 2.75 MB

english, 2015

2

Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

Prensner, John R, Iyer, Matthew K, Balbin, O Alejandro, Dhanasekaran, Saravana M, Cao, Qi, Brenner, J Chad, Laxman, Bharathi, Asangani, Irfan A, Grasso, Catherine S, Kominsky, Hal D, Cao, Xuhong, Jing

Journal:

Nature Biotechnology

Year:

2011

Language:

english

File:

PDF, 1.16 MB

english, 2011

3

Integrative Clinical Sequencing in the Management of Refractory or Relapsed Cancer in Youth

Mody, Rajen J., Wu, Yi-Mi, Lonigro, Robert J., Cao, Xuhong, Roychowdhury, Sameek, Vats, Pankaj, Frank, Kevin M., Prensner, John R., Asangani, Irfan, Palanisamy, Nallasivam, Dillman, Jonathan R., Rabah

Journal:

JAMA The Journal of the American Medical Association

Year:

2015

Language:

english

File:

PDF, 397 KB

english, 2015

4

Oncogenic Role of THOR , a Conserved Cancer/Testis Long Non-coding RNA

Hosono, Yasuyuki, Niknafs, Yashar S., Prensner, John R., Iyer, Matthew K., Dhanasekaran, Saravana M., Mehra, Rohit, Pitchiaya, Sethuramasundaram, Tien, Jean, Escara-Wilke, June, Poliakov, Anton, Chu,

Journal:

Year:

2017

Language:

english

File:

PDF, 12.22 MB

english, 2017

5

An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer

Wang, Xiao-Song, Prensner, John R, Chen, Guoan, Cao, Qi, Han, Bo, Dhanasekaran, Saravana M, Ponnala, Rakesh, Cao, Xuhong, Varambally, Sooryanarayana, Thomas, Dafydd G

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 6.83 MB

english, 2009

6

Metabolism unhinged: IDH mutations in cancer

Prensner, John R, Chinnaiyan, Arul M

Journal:

Nature Medicine

Year:

2011

Language:

english

File:

PDF, 315 KB

english, 2011

7

Analysis of the Tau-Associated Proteome Reveals That Exchange of Hsp70 for Hsp90 Is Involved in Tau Degradation

Thompson, Andrea D., Scaglione, K. Matthew, Prensner, John, Gillies, Anne T., Chinnaiyan, Arul, Paulson, Henry L., Jinwal, Umesh K., Dickey, Chad A., Gestwicki, Jason E.

Journal:

ACS Chemical Biology

Year:

2012

Language:

english

File:

PDF, 4.33 MB

english, 2012

8

Expressed Pseudogenes in the Transcriptional Landscape of Human Cancers

Shanker Kalyana-Sundaram, Chandan Kumar-Sinha, Sunita Shankar, Dan R. Robinson, Yi-Mi Wu, Xuhong Cao, Irfan A. Asangani, Vishal Kothari, John R. Prensner, Robert J. Lonigro, Matthew K. Iyer, Terrence

Journal:

Year:

2012

Language:

english

File:

PDF, 101 KB

english, 2012

9

Coordinated Regulation of Polycomb Group Complexes through microRNAs in Cancer

Qi Cao, Ram-Shankar Mani, Bushra Ateeq, Saravana M. Dhanasekaran, Irfan A. Asangani, John R. Prensner, Jung H. Kim, J. Chad Brenner, Xiaojun Jing, Xuhong Cao, Rui Wang, Yong Li, Arun Dahiya, Lei Wang,

Journal:

Year:

2011

Language:

english

File:

PDF, 2.15 MB

english, 2011

10

Oncogenic gene fusions in epithelial carcinomas

John R Prensner, Arul M Chinnaiyan

Journal:

Current Opinion in Genetics & Development

Year:

2009

Language:

english

File:

PDF, 788 KB

english, 2009

11

A FIRE-y PAGE in the Computational Analysis of Cancer Profiles

John R. Prensner, Arul M. Chinnaiyan

Journal:

Year:

2009

Language:

english

File:

PDF, 217 KB

english, 2009

12

The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex

Prensner, John R, Iyer, Matthew K, Sahu, Anirban, Asangani, Irfan A, Cao, Qi, Patel, Lalit, Vergara, Ismael A, Davicioni, Elai, Erho, Nicholas, Ghadessi, Mercedeh, Jenkins, Robert B, Triche, Timothy J

Journal:

Nature Genetics

Year:

2013

Language:

english

File:

PDF, 1.49 MB

english, 2013

13

Reconstructing targetable pathways in lung cancer by integrating diverse omics data

Balbin, O. Alejandro, Prensner, John R., Sahu, Anirban, Yocum, Anastasia, Shankar, Sunita, Malik, Rohit, Fermin, Damian, Dhanasekaran, Saravana M., Chandler, Benjamin, Thomas, Dafydd, Beer, David G.,

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 1.04 MB

english, 2013

14

Role of the TMPRSS2-ERG Gene Fusion in Prostate Cancer

Tomlins, Scott A., Laxman, Bharathi, Varambally, Sooryanarayana, Cao, Xuhong, Yu, Jindan, Helgeson, Beth E., Cao, Qi, Prensner, John R., Rubin, Mark A., Shah, Rajal B., Mehra, Rohit, Chinnaiyan, Arul

Journal:

Year:

2008

Language:

english

File:

PDF, 2.12 MB

english, 2008

15

Systematic, evidence-based discovery of biomarkers at the NCI

John R. Prensner,Arul M. Chinnaiyan…

Journal:

Clinical and Experimental Metastasis

Year:

2012

Language:

english

File:

PDF, 278 KB

english, 2012

16

RNA biomarkers associated with metastatic progression in prostate cancer: a multi-institutional high-throughput analysis of SChLAP1

Prensner, John R, Zhao, Shuang, Erho, Nicholas, Schipper, Matthew, Iyer, Matthew K, Dhanasekaran, Saravana M, Magi-Galluzzi, Cristina, Mehra, Rohit, Sahu, Anirban, Siddiqui, Javed, Davicioni, Elai, De

Journal:

The Lancet Oncology

Year:

2014

Language:

english

File:

PDF, 644 KB

english, 2014

17

Targeting the MLL complex in castration-resistant prostate cancer

Malik, Rohit, Khan, Amjad P, Asangani, Irfan A, Cieślik, Marcin, Prensner, John R, Wang, Xiaoju, Iyer, Matthew K, Jiang, Xia, Borkin, Dmitry, Escara-Wilke, June, Stender, Rachell, Wu, Yi-Mi, Niknafs,

Journal:

Nature Medicine

Year:

2015

Language:

english

File:

PDF, 3.40 MB

english, 2015

18

KRAS-G12C Mutation Is Associated with Poor Outcome in Surgically Resected Lung Adenocarcinoma

Nadal, Ernest, Chen, Guoan, Prensner, John R., Shiratsuchi, Hiroe, Sam, Christine, Zhao, Lili, Kalemkerian, Gregory P., Brenner, Dean, Lin, Jules, Reddy, Rishindra M., Chang, Andrew C., Capellà, Gabri

Journal:

Journal of Thoracic Oncology

Year:

2014

Language:

english

File:

PDF, 713 KB

english, 2014

19

The landscape of antisense gene expression in human cancers

Balbin, O. Alejandro, Malik, Rohit, Dhanasekaran, Saravana M., Prensner, John R., Cao, Xuhong, Wu, Yi-Mi, Robinson, Dan, Wang, Rui, Chen, Guoan, Beer, David G., Nesvizhskii, Alexey I., Chinnaiyan, Aru

Journal:

Genome Research

Year:

2015

Language:

english

File:

PDF, 1.11 MB

english, 2015

20

The Long Non-Coding RNA PCAT-1 Promotes Prostate Cancer Cell Proliferation through cMyc

Prensner, John R., Chen, Wei, Han, Sumin, Iyer, Matthew K., Cao, Qi, Kothari, Vishal, Evans, Joseph R., Knudsen, Karen E., Paulsen, Michelle T., Ljungman, Mats, Lawrence, Theodore S., Chinnaiyan, Arul

Journal:

Year:

2014

Language:

english

File:

PDF, 546 KB

english, 2014

21

A Novel RNA In Situ Hybridization Assay for the Long Noncoding RNA SChLAP1 Predicts Poor Clinical Outcome After Radical Prostatectomy in Clinically Localized Prostate Cancer

Mehra, Rohit, Shi, Yang, Udager, Aaron M., Prensner, John R., Sahu, Anirban, Iyer, Matthew K., Siddiqui, Javed, Cao, Xuhong, Wei, John, Jiang, Hui, Feng, Felix Y., Chinnaiyan, Arul M.

Journal:

Year:

2014

Language:

english

File:

PDF, 724 KB

english, 2014

22

The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression

Niknafs, Yashar S., Han, Sumin, Ma, Teng, Speers, Corey, Zhang, Chao, Wilder-Romans, Kari, Iyer, Matthew K., Pitchiaya, Sethuramasundaram, Malik, Rohit, Hosono, Yasuyuki, Prensner, John R., Poliakov,

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

23

Precision medicine in pediatric oncology: Lessons learned and next steps

Mody, Rajen J., Prensner, John R., Everett, Jessica, Parsons, D. Williams, Chinnaiyan, Arul M.

Journal:

Pediatric Blood & Cancer

Year:

2016

Language:

english

File:

PDF, 597 KB

english, 2016

24

Burkitt’s Lymphoma Presenting as Menorrhagia and a Vaginal Mass in an Adolescent

Wilkie, Gianna L., Taggart, Ashley A., Prensner, John R., Billett, Amy L., Laufer, Marc R.

Journal:

Journal of Pediatric and Adolescent Gynecology

Year:

2018

Language:

english

File:

PDF, 361 KB

english, 2018

25

The lncRNAs PCGEM1 and PRNCR1 are not implicated in castration resistant prostate cancer

Prensner, John R., Sahu, Anirban, Iyer, Matthew K., Malik, Rohit, Chandler, Benjamin, Asangani, Irfan A., Poliakov, Anton, Vergara, Ismael A., Alshalalfa, Mohammed, Jenkins, Robert B., Davicioni, Elai

Journal:

Year:

2014

Language:

english

File:

PDF, 700 KB

english, 2014

26

Clinically Integrated Sequencing Alters Therapy in Children and Young Adults With High-Risk Glial Brain Tumors

Koschmann, Carl, Wu, Yi-Mi, Kumar-Sinha, Chandan, Lonigro, Robert, Vats, Pankaj, Kasaian, Katayoon, Cieslik, Marcin, Cao, Xuhong, Anderson, Bailey, Frank, Kevin, Zhao, Lili, Prensner, John R., Zureick

Journal:

JCO Precision Oncology

Year:

2018

Language:

english

File:

PDF, 862 KB

english, 2018

27

An Emerging Role for Endothelial Barrier Support Therapy for Congenital Disorders of Glycosylation

Brucker, William J., Croteau, Stacy E., Prensner, John R., Cullion, Kate, Heeney, Matthew M., Lo, Jeffrey, McAlvin, James B., Peeler, Katherine, Shah, Nidhi, Yee, Christina S.K., Berry, Gerard T., Bod

Journal:

Journal of Inherited Metabolic Disease

Year:

2020

File:

PDF, 1.55 MB

2020

28

Safety and efficacy of gammaâsecretase inhibitor nirogacestat (PFâ03084014) in desmoid tumor: Report of four pediatric/young adult cases

Takahashi, Takuto, Prensner, John R., Robson, Caroline D., Janeway, Katherine A., Weigel, Brenda J.

Journal:

Pediatric Blood & Cancer

Year:

2020

File:

PDF, 358 KB

2020

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